Source code for pathway_forte.prediction.utils

# -*- coding: utf-8 -*-

"""Utilities for prediction."""

from typing import Tuple

from sklearn.decomposition import PCA

__all__ = [
    'pca_chaining',
]


[docs]def pca_chaining(train, test, n_components) -> Tuple: """Chain PCA with logistic regression. :param pandas.core.frame.DataFrame train: Training set to apply dimensionality reduction to :param pandas.core.series.Series test: Test set to apply dimensionality reduction to :param n_components: Amount of variance retained :return: array-like, shape (n_samples, n_components) """ # Make an instance of the model pca = PCA(n_components) # Fit PCA on the training set only then transform both train_transformed = pca.fit_transform(train) test_transformed = pca.transform(test) return train_transformed, test_transformed